scGET-seq simultaneously profiles euchromatin and heterochromatin. scGET-seq exploits the concurrent action of transposase Tn5 and its hybrid form TnH, which targets H3K9me3 domains. Here we present a step-by-step protocol to profile single cells by scGET-seq using a 10× Chromium Controller. We describe steps for transposomes preparation and validation. We detail nuclei preparation and transposition, followed by encapsulation, library preparation, sequencing, and data analysis. For complete details on the use and execution of this protocol, please refer to Tedesco et al. (2022)1 and de Pretis and Cittaro (2022).2
Analyzing genomic and epigenetic profiles in single cells by hybrid transposase (scGET-seq) / Cittaro, D.; Lazarevic, D.; Tonon, G.; Giannese, F.. - In: STAR PROTOCOLS. - ISSN 2666-1667. - 4:2(2023). [10.1016/j.xpro.2023.102176]
Analyzing genomic and epigenetic profiles in single cells by hybrid transposase (scGET-seq)
Tonon G.Penultimo
;
2023-01-01
Abstract
scGET-seq simultaneously profiles euchromatin and heterochromatin. scGET-seq exploits the concurrent action of transposase Tn5 and its hybrid form TnH, which targets H3K9me3 domains. Here we present a step-by-step protocol to profile single cells by scGET-seq using a 10× Chromium Controller. We describe steps for transposomes preparation and validation. We detail nuclei preparation and transposition, followed by encapsulation, library preparation, sequencing, and data analysis. For complete details on the use and execution of this protocol, please refer to Tedesco et al. (2022)1 and de Pretis and Cittaro (2022).2| File | Dimensione | Formato | |
|---|---|---|---|
|
1-s2.0-S266616672300134X-main.pdf
accesso aperto
Tipologia:
PDF editoriale (versione pubblicata dall'editore)
Licenza:
Creative commons
Dimensione
7.32 MB
Formato
Adobe PDF
|
7.32 MB | Adobe PDF | Visualizza/Apri |
I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
